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Species belonging to selected taxon:

Ricinus communis



ABOUT THIS RECORD

ID: MNEST040330
species: Ricinus communis
miRNA family: MIR156
source: miRBase, original name: rco-MIR156a (MI0013370)

Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCACA

miRNA*
TGCTCACCCTCTATCTGTCGCC

mismatches: 2
bulges: 1

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pre-miRNA
GGGCGTGACAGAAGAGAGTGAGCACACATGGTTTTCTTGCATATCGATACTTGATGCTTTTAGCTCTGTGTGCTCACCCTCTATCTGTCGCCCACCT

dot-bracket secondary structure
((((..((((((((((.(((((((((((.((((.....((((...........))))....)))).))))))))))).)))).))))))))))....


SIMILARITIES
miRBase ath-MIR156f: 0.000000001

PMRD ath-miRf10257-akr: 0.000000001

microPC miR156: 0.00000002
UniProt no hits

RFAM mir-156: 5e-43

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR

references

[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"




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